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Creators/Authors contains: "Wang, Xi"

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  1. Intrinsically disordered regions (IDRs) are important components of protein functionality, with their charge distribution serving as a key factor in determining their roles. Notably, many proteins possess IDRs that are highly negatively charged, characterized by sequences rich in aspartate (D) or glutamate (E) residues. Bioinformatic analyses indicate that negatively charged low-complexity IDRs are significantly more common than their positively charged counterparts rich in arginine (R) or lysine (K). For instance, sequences of 10 or more consecutive negatively charged residues (D or E) are present in 268 human proteins. In contrast, corresponding sequences of 10 or more consecutive positively charged residues (K or R) are present in only 12 human proteins. Interestingly, about 50% of proteins containing D/E tracts function as DNA-binding or RNA-binding proteins. Negatively charged IDRs can electrostatically mimic nucleic acids and dynamically compete with them for the DNA-binding domains (DBDs) or RNA-binding domains (RBDs) that are positively charged. This leads to a phenomenon known as autoinhibition, in which the negatively charged IDRs inhibit binding to nucleic acids by occupying the binding interfaces within the proteins through intramolecular interactions. Rather than merely reducing binding activity, negatively charged IDRs offer significant advantages for the functions of DNA/RNA-binding proteins. The dynamic competition between negatively charged IDRs and nucleic acids can accelerate the target search processes for these proteins. When a protein encounters DNA or RNA, the electrostatic repulsion force between the nucleic acids and the negatively charged IDRs can trigger conformational changes that allow the nucleic acids to access DBDs or RBDs. Additionally, when proteins are trapped at high-affinity non-target sites on DNA or RNA ("decoys"), the electrostatic repulsion from the negatively charged IDRs can rescue the proteins from these traps. Negatively charged IDRs act as gatekeepers, rejecting nonspecific ligands while allowing the target to access the molecular interfaces of DBDs or RBDs, which increases binding specificity. These IDRs can also promote proper protein folding, facilitate chromatin remodeling by displacing other proteins bound to DNA, and influence phase separation, affecting local pH. The functions of negatively charged IDRs can be regulated through protein-protein interactions, post-translational modifications, and proteolytic processing. These characteristics can be harnessed as tools for protein engineering. Some frame-shift mutations that convert negatively charged IDRs into positively charged ones are linked to human diseases. Therefore, it is crucial to understand the physicochemical properties and functional roles of negatively charged IDRs that compete with nucleic acids. 
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    Free, publicly-accessible full text available July 9, 2026
  2. Abstract Zero‐standby power sensors are crucial for enhancing the safety and widespread adoption of hydrogen (H2) technologies in chemical processes and sustainable energy applications, given the flammability of H2at low concentrations. Here, we report an event‐driven hydrogen sensing system utilizing palladium (Pd)‐based micromechanical cantilever switches. The detection mechanism relies on strain generation in the Pd layer, which undergoes reversible volume expansion upon hydrogen adsorption. Our experimental and simulation results demonstrate that the bistable micromechanical switch‐based sensor generates a wake‐up signal with activation time depending on hydrogen concentration in the target environment while always remaining active for events without any standby power consumption under normal conditions. The H2adsorption‐induced subsequent switching of the multi‐cantilever‐based switch configuration on the sensor resulted in the quasi‐quantification of hydrogen concentrations. The reported zero‐standby power sensor's operational lifetime is limited by the frequency of detection events and exposure to concentrations exceeding hydrogen's flammability limit. This work advances the development of high‐density, maintenance‐free sensor networks for large‐scale deployment with Internet of Things devices, enabling unattended continuous monitoring of hydrogen generation, transportation, distribution, and end‐user applications. 
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    Free, publicly-accessible full text available August 1, 2026
  3. Free, publicly-accessible full text available June 7, 2026
  4. Abstract Infrared (IR) gradient permittivity materials are the potential building blocks of miniature IR‐devices such as an on‐chip spectrometer. The manufacture of materials with permittivities that vary in the horizontal plane is demonstrated using shadow mask molecular beam epitaxy in Si:InAs films. However, to be useful, the permittivity gradient needs to be of high crystalline quality and its properties need to be tunable. In this paper, it is shown that it can control the permittivity gradient length and steepness by varying the shadow mask thickness. Samples grown with similar growth parameters and with 200 and 500 µm mask thicknesses show permittivity gradient widths of 18 and 39 µm on the flat mesa on one side and 11 and 23 µm on the film slope on the other side, respectively. The gradient steepnesses are 23.3 and 11.3 cm−1/µm on the flat mesa and 21.8 and 9.1 cm−1/µm on the film slope, for samples made with the 200 and 500 µm masks, respectively. This work clearly shows the ability to control the in‐plane permittivity gradient in Si:InAs films, setting the stage for the creation of miniature IR devices. 
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    Free, publicly-accessible full text available May 3, 2026
  5. Abstract Infrared spectroscopy currently requires the use of bulky, expensive, and/or fragile spectrometers. For gas sensing, environmental monitoring, or other applications, an inexpensive, compact, robust on‐chip spectrometer is needed. One way to achieve this is through gradient permittivity materials, in which the material permittivity changes as a function of position in the plane. Here, synthesis of infrared gradient permittivity materials is demonstrated using shadow mask molecular beam epitaxy. The permittivity of the material changes as a function of position in the lateral direction, confining varying wavelengths of infrared light at varying horizontal locations. An electric field enhancement corresponding to wavenumbers ranging from ≈650 to 900 cm−1over an in‐plane width of ≈13 µm on the flat mesa of the sample is shown. An electric field enhancement corresponding to wavenumbers ranging from ≈900 to 1250 cm−1over an in‐plane width of ≈13 µm on the slope of the sample is also shown. These two different regions of electric field enhancement develop on two opposite sides of the material. This demonstration of a scalable method of creating in‐plane gradient permittivity material can be leveraged for the creation of a variety of miniature infrared devices, such as an ultracompact spectrometer. 
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  6. Free, publicly-accessible full text available December 1, 2025
  7. The snowball Earth hypothesis predicts that continental chemical weathering diminished substantially during, but rebounded strongly after, the Marinoan ice age some 635 Mya. Defrosting the planet would result in a plume of fresh glacial meltwater with a different chemical composition from underlying hypersaline seawater, generating both vertical and lateral salinity gradients. Here, we test the plumeworld hypothesis using lithium isotope compositions in the Ediacaran Doushantuo cap dolostone that accumulated in the aftermath of the Marinoan snowball Earth along a proximal–distal (nearshore–offshore) transect in South China. Our data show an overall decreasing δ7Li trend with distance from the shoreline, consistent with the variable mixing of a meltwater plume with high δ7Li (due to incongruent silicate weathering on the continent) and hypersaline seawater with low δ7Li (due to synglacial distillation). The evolution of low δ7Li of synglacial seawater, as opposed to the modern oceans with high δ7Li, was likely driven by weak continental chemical weathering coupled with strong reverse weathering on the seafloor underneath silica-rich oceans. The spatial pattern of δ7Li is also consistent with the development and then collapse of the meltwater plume that occurred at the time scale of cap dolostone accumulation. Therefore, the δ7Li data are consistent with the plumeworld hypothesis, considerably reduced chemical weathering on the continent during the Marinoan snowball Earth, and enhanced reverse weathering on the seafloor of Precambrian oceans. 
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    Free, publicly-accessible full text available November 12, 2025